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    LOC4347517 MADS-box transcription factor 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347517, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4347517
    Gene description
    MADS-box transcription factor 8-like
    Locus tag
    OSNPB_090507200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MADS8; MADS24; OsMADS8; OsMADS24; OsJ_29947
    Expression
    Biased expression in flower buds (RPKM 222.0), flowers (RPKM 166.7) and 1 other tissue See more
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    Genomic context

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    See LOC4347517 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19653380..19659766)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene TITAN-like protein Neighboring gene squamosa promoter-binding-like protein 18 Neighboring gene L-ascorbate oxidase Neighboring gene uncharacterized LOC4347519

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of two rice MADS box genes that control flowering time. Kang HG, et al. Mol Cells, 1997 Aug 31. PMID 9339904
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MADS-box transcription factor 8
    Names
    LOC_Os09g32948
    MADS box protein
    MADS-box protein 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422804.1 → NP_001409733.1  MADS-box transcription factor 8

      Status: VALIDATED

      Source sequence(s)
      AK072867, CI741722, U78892
      UniProtKB/Swiss-Prot
      O03998, O04370, Q0J0J8, Q9SAR1
      UniProtKB/TrEMBL
      B8BDB7, D3U2G8

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19653380..19659766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020386.1 → XP_025876171.1  MADS-box transcription factor 8 isoform X1

      UniProtKB/TrEMBL
      B8BDB7
      Conserved Domains (2) summary
      cd00265
      Location:2 → 84
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:98 → 180
      K-box; K-box region

    2. XM_015755338.1 → XP_015610824.1  MADS-box transcription factor 8 isoform X2

      UniProtKB/Swiss-Prot
      Q9SAR1
      Conserved Domains (2) summary
      cd00265
      Location:2 → 77
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:90 → 175
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAR1.1 GenPept UniProtKB/Swiss-Prot:Q9SAR1

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