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    LOC4347569 endochitinase A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347569, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4347569
    Gene description
    endochitinase A
    Locus tag
    OSNPB_090514700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347569 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24454635..24463122)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20043399..20051894)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347567 Neighboring gene uncharacterized LOC4347568 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene uncharacterized LOC4347571

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    endochitinase A; uncharacterized protein LOC4347569
    Names
    Os09g0514700
    P0450E05.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24454635..24463122
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757185.3 → XP_015612671.1  endochitinase A isoform X1

      UniProtKB/TrEMBL
      B9G4J7
      Conserved Domains (1) summary
      pfam18953
      Location:17 → 56
      SAP_new25; SAP domain-containing new25

    2. XM_015757186.3 → XP_015612672.1  endochitinase A isoform X2

      UniProtKB/TrEMBL
      B9G4J7
      Conserved Domains (1) summary
      pfam18953
      Location:17 → 56
      SAP_new25; SAP domain-containing new25

    3. XM_066304361.1 → XP_066160458.1  endochitinase A isoform X5

      UniProtKB/TrEMBL
      A0A0P0XQ43, Q69IM5

    4. XM_015757187.3 → XP_015612673.1  uncharacterized protein LOC4347569 isoform X4

      UniProtKB/TrEMBL
      A0A0P0XQ43, Q69IM5

    5. XM_066304360.1 → XP_066160457.1  uncharacterized protein LOC4347569 isoform X3

      UniProtKB/TrEMBL
      A0A0P0XQ43, Q69IM5

    RNA

    1. XR_010735174.1 RNA Sequence

    2. XR_010735175.1 RNA Sequence

    3. XR_001540184.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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