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    LOC4346072 ranBP2-type zinc finger protein At1g67325 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346072, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346072
    Gene description
    ranBP2-type zinc finger protein At1g67325
    Locus tag
    OSNPB_080521400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_A09.35-1; OJ1003_A09.35-2; OJ1003_A09.35-3; OJ1081_B12.106-1; OJ1081_B12.106-2; OJ1081_B12.106-3
    Expression
    Ubiquitous expression in flowers (RPKM 15.6), flower buds (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4346072 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26083343..26088544)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25937074..25942376)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pollen receptor-like kinase 4 Neighboring gene uncharacterized LOC4346071 Neighboring gene small nucleolar RNA Z247 Neighboring gene ethylene-responsive transcription factor ERF015

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP2-type zinc finger protein At1g67325
    Names
    Os08g0521400
    p53 binding protein-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26083343..26088544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794741.3 → XP_015650227.1  ranBP2-type zinc finger protein At1g67325 isoform X3

      UniProtKB/TrEMBL
      A3BUY2, B8B8U6, Q6YZU6, Q7F1K3
      Conserved Domains (4) summary
      smart00547
      Location:197 → 223
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:199 → 220
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:243 → 273
      zf-RanBP; Zn-finger in Ran binding protein and others
      cl02656
      Location:23 → 45
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. XM_015794738.3 → XP_015650224.1  ranBP2-type zinc finger protein At1g67325 isoform X1

      UniProtKB/TrEMBL
      A3BUY2, B8B8U6, Q6YZU7, Q7F1K4
      Conserved Domains (3) summary
      smart00547
      Location:197 → 223
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:199 → 220
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:243 → 273
      zf-RanBP; Zn-finger in Ran binding protein and others

    3. XM_015794739.3 → XP_015650225.1  ranBP2-type zinc finger protein At1g67325 isoform X1

      UniProtKB/TrEMBL
      A3BUY2, B8B8U6, Q6YZU7, Q7F1K4
      Conserved Domains (3) summary
      smart00547
      Location:197 → 223
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:199 → 220
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:243 → 273
      zf-RanBP; Zn-finger in Ran binding protein and others

    4. XM_015794742.3 → XP_015650228.1  ranBP2-type zinc finger protein At1g67325 isoform X4

      Conserved Domains (4) summary
      smart00547
      Location:196 → 222
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:198 → 219
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:242 → 272
      zf-RanBP; Zn-finger in Ran binding protein and others
      cl02656
      Location:23 → 45
      zf-RanBP; Zn-finger in Ran binding protein and others

    5. XM_015794740.3 → XP_015650226.1  ranBP2-type zinc finger protein At1g67325 isoform X2

      UniProtKB/TrEMBL
      A3BUY2, B8B8U6, Q6YZU8, Q7F1K5
      Conserved Domains (3) summary
      smart00547
      Location:196 → 222
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:198 → 219
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:242 → 272
      zf-RanBP; Zn-finger in Ran binding protein and others

    6. XM_066303331.1 → XP_066159428.1  ranBP2-type zinc finger protein At1g67325 isoform X2

      UniProtKB/TrEMBL
      Q6YZU8, Q7F1K5

    RNA

    1. XR_010734353.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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