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    LOC4333346 uncharacterized LOC4333346 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333346, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333346
    Gene description
    uncharacterized LOC4333346
    Locus tag
    OSNPB_030586900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 19.1), flower buds (RPKM 16.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (22532066..22538552)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21673687..21680355)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333344 Neighboring gene lysine--tRNA ligase-like Neighboring gene inositol monophosphatase 3 Neighboring gene uncharacterized LOC4333348 Neighboring gene kinesin-like protein KIN-12C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333346
    Names
    DNA-binding protein SMUBP-2
    Os03g0586900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      22532066..22538552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775979.3 → XP_015631465.1  uncharacterized protein LOC4333346 isoform X2

      Conserved Domains (1) summary
      TIGR00376
      Location:1 → 575
      TIGR00376; DNA helicase, putative

    2. XM_015775978.3 → XP_015631464.1  uncharacterized protein LOC4333346 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VZU2, B8AL83, B9F9H4, Q6F2U8
      Conserved Domains (1) summary
      TIGR00376
      Location:37 → 648
      TIGR00376; DNA helicase, putative
    Nucleotide Protein
    Heading Accession and Version

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