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    LOC9270188 F-box/kelch-repeat protein At5g60570 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270188, updated on 13-Jul-2024

    Summary

    Gene symbol
    LOC9270188
    Gene description
    F-box/kelch-repeat protein At5g60570
    Locus tag
    OSNPB_040619200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 21.6), flower buds (RPKM 14.5) and 6 other tissues See more
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    Genomic context

    See LOC9270188 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31966640..31969711)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31458928..31462022)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 21/22 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene uncharacterized LOC112936057 Neighboring gene uncharacterized LOC136356029 Neighboring gene cold-responsive protein kinase 1 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    F-box/kelch-repeat protein At5g60570
    Names
    F-box domain and kelch repeat containing protein FBK15
    Os04g0619200
    Os04g0619300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31966640..31969711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780763.3XP_015636249.1  F-box/kelch-repeat protein At5g60570

      UniProtKB/TrEMBL
      A0A0P0WES8, A0A5S6R8U5, B7EAI4, B8AUG2, Q0JA26, Q7XTU2, Q9SC69
      Conserved Domains (2) summary
      PHA03098
      Location:178384
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:244289
      Kelch; KELCH repeat [structural motif]