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    LOC4346841 probable LRR receptor-like serine/threonine-protein kinase At1g51810 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346841, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4346841
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g51810
    Locus tag
    OSNPB_090359500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 14.2), roots after flowering (RPKM 0.9) and 2 other tissues See more
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    Genomic context

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    See LOC4346841 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16020939..16033198)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (11664374..11676631)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase MEE39 Neighboring gene uncharacterized LOC136351903 Neighboring gene uncharacterized LOC136351702 Neighboring gene syntaxin-72 Neighboring gene probable protein arginine N-methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g51810; probable LRR receptor-like serine/threonine-protein kinase PAM74
    Names
    Os09g0359500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16020939..16033198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755863.3 → XP_015611349.1  probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1

      Conserved Domains (3) summary
      PLN00113
      Location:395 → 467
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      pfam12819
      Location:28 → 352
      Malectin_like; Carbohydrate-binding protein of the ER
      cl21453
      Location:565 → 828
      PKc_like; Protein Kinases, catalytic domain

    2. XM_066303937.1 → XP_066160034.1  probable LRR receptor-like serine/threonine-protein kinase PAM74 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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