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    LOC4326958 aspartokinase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326958, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4326958
    Gene description
    aspartokinase 2, chloroplastic
    Locus tag
    OSNPB_010927900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326958 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41352381..41356694, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40708637..40712973, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 4-like Neighboring gene uncharacterized LOC112937620 Neighboring gene transcription factor ICE1 Neighboring gene uncharacterized LOC136354890

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homoserine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysine biosynthetic process via diaminopimelate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartokinase 1, chloroplastic; aspartokinase 2, chloroplastic
    Names
    OSJNBa0052O12.2
    OSJNBa0093F16.38
    Os01g0927900
    putative aspartate kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41352381..41356694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306744.1 → XP_066162841.1  aspartokinase 1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8A8I6

    2. XM_015795491.3 → XP_015650977.1  aspartokinase 2, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8A8I6, Q0JGE3, Q5JK18, Q5JK45
      Conserved Domains (1) summary
      PLN02551
      Location:96 → 567
      PLN02551; aspartokinase
    Nucleotide Protein
    Heading Accession and Version

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