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    LOC4338449 chaperone protein dnaJ A7A, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338449, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4338449
    Gene description
    chaperone protein dnaJ A7A, chloroplastic-like
    Locus tag
    OSNPB_050333500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DJA7; DJA7A; OsDjA7; OsJ_18101; OJ1005_D04.16
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    Genomic context

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    See LOC4338449 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (15707015..15713597, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15617647..15624213, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 22-like Neighboring gene guanine nucleotide-binding protein alpha-1 subunit Neighboring gene chaperone protein dnaJ A7A, chloroplastic-like Neighboring gene chaperone protein dnaJ A7A, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heat shock protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein dnaJ A7A, chloroplastic-like
    Names
    Chaperone protein dnaJ A7
    Chaperone protein dnaJ A7A, chloroplastic
    LOC_Os05g26902
    OSJNBa0049D13.2
    Os05g0333600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420361.1 → NP_001407290.1  chaperone protein dnaJ A7A, chloroplastic-like

      Status: VALIDATED

      Source sequence(s)
      AK243178
      UniProtKB/Swiss-Prot
      P0DO01, P0DO02, P0DO03, Q5W730, Q948S9
      UniProtKB/TrEMBL
      B8AWP4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      15707015..15713597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783695.3 → XP_015639181.1  chaperone protein dnaJ A7A, chloroplastic-like isoform X2

      UniProtKB/TrEMBL
      B8AWP4
      Conserved Domains (1) summary
      TIGR02349
      Location:89 → 436
      DnaJ_bact; chaperone protein DnaJ

    2. XM_015783694.3 → XP_015639180.1  chaperone protein dnaJ A7A, chloroplastic-like isoform X1

      UniProtKB/Swiss-Prot
      P0DO01, P0DO02, P0DO03, Q5W730, Q948S9
      UniProtKB/TrEMBL
      B8AWP4
      Conserved Domains (1) summary
      TIGR02349
      Location:90 → 437
      DnaJ_bact; chaperone protein DnaJ
    Nucleotide Protein
    Heading Accession and Version

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