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    LOC4329648 ultraviolet-B receptor UVR8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329648, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329648
    Gene description
    ultraviolet-B receptor UVR8
    Locus tag
    OSNPB_020554100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 60.1), flower buds (RPKM 42.3) and 4 other tissues See more
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    Genomic context

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    See LOC4329648 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21392674..21397859)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20913866..20919101)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase II transcriptional coactivator KIWI Neighboring gene uncharacterized LOC4329647 Neighboring gene uncharacterized LOC4329649 Neighboring gene phosphoinositide phosphatase SAC7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ultraviolet-B receptor UVR8
    Names
    Os02g0554100
    P0470G10.15
    putative UVB-resistance protein (UVR8)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21392674..21397859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770636.3 → XP_015626122.1  ultraviolet-B receptor UVR8

      UniProtKB/TrEMBL
      A0A0P0VKA8, B8AJF0, Q69SU2
      Conserved Domains (1) summary
      COG5184
      Location:23 → 387
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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