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    LOC4328823 U2 small nuclear ribonucleoprotein A' [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328823, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328823
    Gene description
    U2 small nuclear ribonucleoprotein A'
    Locus tag
    OSNPB_020234800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1145_E05.10
    Expression
    Ubiquitous expression in flower buds (RPKM 69.5), leaves before flowering (RPKM 66.3) and 6 other tissues See more
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    Genomic context

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    See LOC4328823 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7655955..7660301, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7630851..7635237, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene uncharacterized LOC4328822 Neighboring gene actin-related protein 2/3 complex subunit 3 Neighboring gene uncharacterized LOC9266753

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U2 small nuclear ribonucleoprotein A'
    Names
    Os02g0234800
    putative U2 snRNP protein A'

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7655955..7660301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771842.2 → XP_015627328.1  U2 small nuclear ribonucleoprotein A'

      UniProtKB/TrEMBL
      B8AEK8, B9F4G6, Q6EUK2
      Conserved Domains (2) summary
      sd00031
      Location:22 → 39
      LRR_1; leucine-rich repeat [structural motif]
      pfam14580
      Location:1 → 174
      LRR_9; Leucine-rich repeat
    Nucleotide Protein
    Heading Accession and Version

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