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    LOC4327297 stem 28 kDa glycoprotein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327297, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327297
    Gene description
    stem 28 kDa glycoprotein
    Locus tag
    OSNPB_010191200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 154.2), flowers (RPKM 70.4) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4883000..4885121, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4872142..4873831, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326781 Neighboring gene large ribosomal subunit protein P2A Neighboring gene uncharacterized LOC112938004 Neighboring gene NAC domain-containing protein 75 Neighboring gene mitochondrial-processing peptidase subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stem 28 kDa glycoprotein
    Names
    Os01g0191200
    P0710E05.30
    putative acid phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      4883000..4885121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769952.3 → XP_015625438.1  stem 28 kDa glycoprotein

      UniProtKB/TrEMBL
      A0A0P0UZ76, A0A979HKT8, A2WLL0, Q0JPZ5, Q9LG77
      Conserved Domains (1) summary
      TIGR01675
      Location:44 → 279
      plant-AP; plant acid phosphatase
    Nucleotide Protein
    Heading Accession and Version

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