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    LOC4330285 uncharacterized LOC4330285 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330285, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330285
    Gene description
    uncharacterized LOC4330285
    Locus tag
    OSNPB_020672700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1197_E09.8; OJ1493_H11.21
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 31.4), mature seeds (RPKM 24.8) and 6 other tissues See more
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    Genomic context

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    See LOC4330285 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27855673..27858293)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27369104..27371869)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-1 Neighboring gene mRNA m(6)A methyltransferase Neighboring gene probable serine/threonine-protein kinase WNK4 Neighboring gene aluminum-activated malate transporter 10-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in termination of RNA polymerase III transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330285
    Names
    DNA-directed RNA polymerase III subunit RPC10
    Os02g0672700
    putative DNA-directed RNA polymerase II
    putative DNA-directed RNA polymerase III

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27855673..27858293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769956.3 → XP_015625442.1  uncharacterized protein LOC4330285

      UniProtKB/TrEMBL
      A2X876, B9F1L5, Q6EU09, Q6EU50
      Conserved Domains (1) summary
      COG1594
      Location:1 → 110
      RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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