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    LOC4334470 DDT domain-containing protein DDR4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334470, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334470
    Gene description
    DDT domain-containing protein DDR4
    Locus tag
    OSNPB_030802800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334470 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34466723..34473067, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33493984..33500500, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene AAA-ATPase At3g28580 Neighboring gene AAA-ATPase At3g28580 Neighboring gene DEAD-box ATP-dependent RNA helicase 27-like Neighboring gene transcription factor BHLH089-like Neighboring gene vesicle-associated membrane protein 721

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RSF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DDT domain-containing protein DDR4
    Names
    Os03g0802800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34466723..34473067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776773.3 → XP_015632259.1  DDT domain-containing protein DDR4

      UniProtKB/TrEMBL
      B9F6J1, Q84T06
      Conserved Domains (2) summary
      pfam02791
      Location:108 → 156
      DDT; DDT domain
      pfam15612
      Location:202 → 232
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    Nucleotide Protein
    Heading Accession and Version

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