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    LOC4339426 probable starch synthase 4, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339426, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4339426
    Gene description
    probable starch synthase 4, chloroplastic/amyloplastic
    Locus tag
    OSNPB_050533600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSIV-2
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    Genomic context

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    See LOC4339426 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26603828..26612133)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26485773..26494167)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA2 Neighboring gene probable serine acetyltransferase 5 Neighboring gene uncharacterized LOC4339427 Neighboring gene uncharacterized LOC4339428

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution and expression analysis of starch synthase III and IV in rice. Dian W, et al. J Exp Bot, 2005 Feb. PMID 15642712
    2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable starch synthase 4, chloroplastic/amyloplastic
    Names
    Os05g0533600
    soluble starch synthase IV-2
    soluble starch synthase IVb
    starch synthase IVb
    starch synthase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26603828..26612133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783519.3 → XP_015639005.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

      UniProtKB/TrEMBL
      B8B084, D0TZW8, Q0DGG7, Q84VC7, Q8L8G7
      Conserved Domains (1) summary
      PLN02939
      Location:12 → 905
      PLN02939; transferase, transferring glycosyl groups

    2. XM_026025461.2 → XP_025881246.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

      UniProtKB/TrEMBL
      D0TZW8, Q8L8G7
      Conserved Domains (1) summary
      PLN02939
      Location:12 → 863
      PLN02939; transferase, transferring glycosyl groups
    Nucleotide Protein
    Heading Accession and Version

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