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    LOC9271739 uncharacterized LOC9271739 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271739, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271739
    Gene description
    uncharacterized LOC9271739
    Locus tag
    OSNPB_050397800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 22.7), roots after flowering (RPKM 21.5) and 6 other tissues See more
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    Genomic context

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    See LOC9271739 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19455455..19459786)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19353523..19357901)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase LUL4 Neighboring gene preprotein translocase subunit SCY2, chloroplastic Neighboring gene kinesin-like protein KIN-14J Neighboring gene cyclin-P3-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9271739
    Names
    Os05g0397800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19455455..19459786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784565.3 → XP_015640051.1  uncharacterized protein LOC9271739

      UniProtKB/TrEMBL
      B8AY11, B9FPH0, Q75HV2
      Conserved Domains (1) summary
      cd06257
      Location:70 → 125
      DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    Nucleotide Protein
    Heading Accession and Version

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