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    LOC4340812 zinc finger protein CONSTANS-LIKE 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340812, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340812
    Gene description
    zinc finger protein CONSTANS-LIKE 9
    Locus tag
    OSNPB_060298200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 20.1), roots after flowering (RPKM 14.7) and 6 other tissues See more
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    Genomic context

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    See LOC4340812 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11070161..11076732, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene C2 and GRAM domain-containing protein At1g03370 Neighboring gene uncharacterized LOC9272020 Neighboring gene uncharacterized LOC112939356 Neighboring gene formin-binding protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 9
    Names
    Os06g0298200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11070161..11076732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788827.2 → XP_015644313.1  zinc finger protein CONSTANS-LIKE 9 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WVL4, A2YC04, A3BAY2, F1DK44, Q0DCR8
      Conserved Domains (2) summary
      pfam06203
      Location:372 → 393
      CCT; CCT motif
      cd19821
      Location:4 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins

    2. XM_015788825.2 → XP_015644311.1  zinc finger protein CONSTANS-LIKE 9 isoform X1

      UniProtKB/TrEMBL
      A2YC04, A3BAY2, B7EN35
      Conserved Domains (2) summary
      cd19821
      Location:4 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:373 → 394
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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