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    LOC4342626 AAA-ATPase At3g28580 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342626, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342626
    Gene description
    AAA-ATPase At3g28580
    Locus tag
    OSNPB_070192000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342626 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5030569..5032309)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4969378..4971156)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein CYSTEINE-RICH TRANSMEMBRANE MODULE 11 Neighboring gene tRNA ligase 1 Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-1 Neighboring gene uncharacterized LOC107281781

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AAA-ATPase At3g28580
    Names
    AAA-type ATPase-like
    OSJNBa0049I08.13
    Os07g0192000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5030569..5032309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792288.3 → XP_015647774.1  AAA-ATPase At3g28580

      UniProtKB/TrEMBL
      A0A0P0X3E6, A2YJ19, Q69S65
      Conserved Domains (2) summary
      pfam14363
      Location:38 → 133
      AAA_assoc; Domain associated at C-terminal with AAA
      cd19510
      Location:243 → 420
      RecA-like_BCS1; Mitochondrial chaperone BCS1
    Nucleotide Protein
    Heading Accession and Version

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