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    LOC4352818 protein YABBY 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352818, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352818
    Gene description
    protein YABBY 6-like
    Locus tag
    OSNPB_120621100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YAB6; OsYAB5; OsYABBY6
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    Genomic context

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    See LOC4352818 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (27194888..27204643)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26477638..26487351)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 8 Neighboring gene uncharacterized LOC107275463 Neighboring gene uncharacterized LOC107278682 Neighboring gene uncharacterized LOC4352820

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1. Toriba T, et al. Mol Genet Genomics, 2007 May. PMID 17216490
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YABBY 6
    Names
    LOC_Os12g42610
    YABBY protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404744.1 → NP_001391673.1  protein YABBY 6

      Status: VALIDATED

      Source sequence(s)
      CF320793, CI259336, CI343238, CI351349, CI594065, CI738203, CV728622
      UniProtKB/Swiss-Prot
      Q2QM17
      UniProtKB/TrEMBL
      B7EXC7, B8BN25

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      27194888..27204643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QM17.1 GenPept UniProtKB/Swiss-Prot:Q2QM17

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