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    LOC4341871 calcium-binding protein KRP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341871, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341871
    Gene description
    calcium-binding protein KRP1
    Locus tag
    OSNPB_060683400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0009H10.9
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    Genomic context

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    See LOC4341871 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29350365..29351046)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28483791..28484493)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L24, chloroplastic Neighboring gene beta-glucosidase 25-like Neighboring gene uncharacterized LOC9268399 Neighboring gene uncharacterized LOC4341874

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding protein KRP1
    Names
    Os06g0683400
    putative EF-hand Ca2+-binding protein CCD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29350365..29351046
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788193.3 → XP_015643679.1  calcium-binding protein KRP1

      UniProtKB/TrEMBL
      A0A0P0X0F6, A2YGB2, A3BER5, Q655G7
      Conserved Domains (1) summary
      pfam13833
      Location:48 → 100
      EF-hand_8; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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