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    LOC4344249 REF/SRPP-like protein At3g05500 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344249, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4344249
    Gene description
    REF/SRPP-like protein At3g05500
    Locus tag
    OSNPB_070671800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 253.6), leaves before flowering (RPKM 153.3) and 6 other tissues See more
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    Genomic context

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    See LOC4344249 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28410533..28412853)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.11 Neighboring gene probable histone-arginine methyltransferase CARM1 Neighboring gene uncharacterized LOC4344250 Neighboring gene protein LURP-one-related 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    REF/SRPP-like protein At3g05500
    Names
    Os07g0671800
    P0470D12.125
    putative stress-related protein
    stress-related protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422283.1 → NP_001409212.1  REF/SRPP-like protein At3g05500

      Status: VALIDATED

      Source sequence(s)
      AK106149, AP014963, CI293712
      UniProtKB/TrEMBL
      A2YPT8, B7EN02, Q8H469

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28410533..28412853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791725.2 → XP_015647211.1  REF/SRPP-like protein At3g05500

      UniProtKB/TrEMBL
      Q8H469
      Conserved Domains (1) summary
      pfam05755
      Location:20 → 239
      REF; Rubber elongation factor protein (REF)
    Nucleotide Protein
    Heading Accession and Version

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