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    LOC4324328 peptidyl-prolyl cis-trans isomerase FKBP15-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324328, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324328
    Gene description
    peptidyl-prolyl cis-trans isomerase FKBP15-1
    Locus tag
    OSNPB_010915800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 48.1), leaves after flowering (RPKM 45.2) and 6 other tissues See more
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    Genomic context

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    See LOC4324328 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40548686..40551005, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39913911..39916532, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC Neighboring gene transcription factor bHLH77 Neighboring gene uncharacterized LOC9266868 Neighboring gene glycine-rich cell wall structural protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP15-1; peptidyl-prolyl cis-trans isomerase FKBP15-2
    Names
    Os01g0915800
    P0004D12.26
    putative immunophilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40548686..40551005 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770109.3 → XP_015625595.1  peptidyl-prolyl cis-trans isomerase FKBP15-2 isoform X2

      Conserved Domains (1) summary
      pfam00254
      Location:33 → 122
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    2. XM_015769999.3 → XP_015625485.1  peptidyl-prolyl cis-trans isomerase FKBP15-1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VC02, Q0JGM5, Q5N801
      Conserved Domains (1) summary
      pfam00254
      Location:51 → 143
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version

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