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    LOC4327669 transcription factor MTB2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327669, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327669
    Gene description
    transcription factor MTB2
    Locus tag
    OSNPB_010705700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327669 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29858931..29861381)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29270757..29273197)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 Neighboring gene uncharacterized LOC4324256 Neighboring gene RNA polymerase II transcriptional coactivator KELP Neighboring gene uncharacterized LOC136357535

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MTB2
    Names
    Os01g0705700
    P0684B02.32
    P0692C11.13
    bHLH protein-like
    transcription factor bHLH13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29858931..29861381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773217.3 → XP_015628703.1  transcription factor MTB2

      UniProtKB/TrEMBL
      A2ZX10, Q5N8F6, Q5NAC5
      Conserved Domains (2) summary
      cd11449
      Location:320 → 377
      bHLH_AtAIB_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein ABA-INDUCIBLE bHLH-TYPE (AIB) and similar proteins
      pfam14215
      Location:42 → 228
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    Nucleotide Protein
    Heading Accession and Version

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