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    LOC4350837 notchless protein homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350837, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4350837
    Gene description
    notchless protein homolog
    Locus tag
    OSNPB_110594200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350837 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (24577826..24584669)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (22630925..22637804)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266484 Neighboring gene hexose carrier protein HEX6 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene uncharacterized LOC4350839

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    notchless protein homolog
    Names
    Os11g0594200
    putative notchless protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      24577826..24584669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759819.3 → XP_015615305.1  notchless protein homolog

      UniProtKB/TrEMBL
      B8AVE2, B9G8B5, Q2R1T0
      Conserved Domains (5) summary
      smart00320
      Location:106 → 143
      WD40; WD40 repeats
      COG2319
      Location:108 → 478
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:149 → 478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08154
      Location:18 → 78
      NLE; NLE (NUC135) domain
      sd00039
      Location:160 → 198
      7WD40; WD40 repeat [structural motif]

    2. XM_015759820.3 → XP_015615306.1  notchless protein homolog

      UniProtKB/TrEMBL
      B8AVE2, B9G8B5, Q2R1T0
      Conserved Domains (5) summary
      smart00320
      Location:106 → 143
      WD40; WD40 repeats
      COG2319
      Location:108 → 478
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:149 → 478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08154
      Location:18 → 78
      NLE; NLE (NUC135) domain
      sd00039
      Location:160 → 198
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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