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    LOC4339047 uncharacterized LOC4339047 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339047, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4339047
    Gene description
    uncharacterized LOC4339047
    Locus tag
    OSNPB_050466100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 2.1), mature seeds (RPKM 0.9) and 3 other tissues See more
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    Genomic context

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    See LOC4339047 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22987840..22989708, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22874240..22876269, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene putative respiratory burst oxidase homolog protein H Neighboring gene uncharacterized LOC112938947 Neighboring gene uncharacterized LOC112939091 Neighboring gene protein NETWORKED 2A Neighboring gene uncharacterized LOC136356486

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339047
    Names
    Os05g0466100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22987840..22989708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783391.3 → XP_015638877.1  uncharacterized protein LOC4339047 isoform X2

      UniProtKB/TrEMBL
      B8AZ18, B9FKM9, Q6I5J7
      Conserved Domains (1) summary
      pfam06203
      Location:181 → 223
      CCT; CCT motif

    2. XM_066310383.1 → XP_066166480.1  uncharacterized protein LOC4339047 isoform X1

      UniProtKB/TrEMBL
      B8AZ18
    Nucleotide Protein
    Heading Accession and Version

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