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    LOC4326573 polygalacturonase At1g48100 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326573, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326573
    Gene description
    polygalacturonase At1g48100
    Locus tag
    OSNPB_010636500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0696E01.9
    Expression
    Broad expression in flower buds (RPKM 4.6), milk grains (RPKM 1.5) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26095250..26099585)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25513769..25518068)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275760 Neighboring gene uncharacterized LOC4326572 Neighboring gene uncharacterized LOC136353842 Neighboring gene peptide deformylase 1B, chloroplastic-like Neighboring gene SNF2 domain-containing protein ENL1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polygalacturonase At1g48100
    Names
    Os01g0636500
    polygalacturonase PG1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26095250..26099585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755617.3 → XP_015611103.1  polygalacturonase At1g48100 isoform X1

      UniProtKB/TrEMBL
      B8ACB7, B9EY89, Q5VNP4
      Conserved Domains (1) summary
      cl19188
      Location:138 → 521
      PL-6; Polysaccharide Lyase Family 6

    2. XM_015755675.3 → XP_015611161.1  polygalacturonase At1g48100 isoform X2

      Conserved Domains (1) summary
      cl19188
      Location:138 → 520
      PL-6; Polysaccharide Lyase Family 6
    Nucleotide Protein
    Heading Accession and Version

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