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    LOC4349128 protein HLB1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349128, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349128
    Gene description
    protein HLB1
    Locus tag
    OSNPB_100518300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 89.4), roots after flowering (RPKM 67.7) and 6 other tissues See more
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    Genomic context

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    See LOC4349128 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20722840..20728481)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20031594..20037201)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene rab GTPase-activating protein 22 Neighboring gene cytochrome b5 Neighboring gene uncharacterized LOC4349130 Neighboring gene DNA excision repair protein ERCC-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HLB1
    Names
    Os10g0518300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      20722840..20728481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759499.2 → XP_015614985.1  protein HLB1

      UniProtKB/TrEMBL
      A0A5S6RDN8, A2Z9D2, Q0IWC7, Q7XCR5, Q94HX4
      Conserved Domains (2) summary
      sd00006
      Location:141 → 184
      TPR; TPR repeat [structural motif]
      cl17171
      Location:363 → 451
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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