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    LOC4324931 uncharacterized LOC4324931 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324931, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324931
    Gene description
    uncharacterized LOC4324931
    Locus tag
    OSNPB_010869600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0039A07.3
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    Genomic context

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    See LOC4324931 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38318712..38321660)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37690285..37693161)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 1 Neighboring gene AUGMIN subunit 7 Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene uncharacterized LOC112937602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plasma membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane lipid distribution IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324931
    Names
    Os01g0869600
    P0677H08.35
    TLC domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38318712..38321660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765682.3 → XP_015621168.2  uncharacterized protein LOC4324931

      UniProtKB/TrEMBL
      A0A5S6RC51, B9EUV9, Q0JHD6, Q5N944, Q5N9Z3
      Conserved Domains (1) summary
      smart00724
      Location:103 → 301
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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