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    LOC4324886 UPF0301 protein Cpar_0662 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324886, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4324886
    Gene description
    UPF0301 protein Cpar_0662
    Locus tag
    OSNPB_010886000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0434C04.2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 34.5), leaves after flowering (RPKM 30.7) and 6 other tissues See more
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    Genomic context

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    See LOC4324886 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38491258..38494163, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene ethylene-responsive transcription factor ERF015 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene MADS-box transcription factor 21-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324886
    Names
    Os01g0886000
    P0408G07.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      38491258..38494163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779261.2 → XP_015634747.1  uncharacterized protein LOC4324886

      UniProtKB/TrEMBL
      A0A0N7KE72, A2WXQ3, A3A0B5, Q5N8S4, Q8S0Q9
      Conserved Domains (1) summary
      pfam02622
      Location:175 → 339
      DUF179; Uncharacterized ACR, COG1678
    Nucleotide Protein
    Heading Accession and Version

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