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    LOC9270800 RNA-binding protein L-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270800, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270800
    Gene description
    RNA-binding protein L-like
    Locus tag
    OSNPB_070516900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9270800 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20147384..20151865)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19920219..19924715)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 40 Neighboring gene uncharacterized LOC9268153 Neighboring gene DEAD-box ATP-dependent RNA helicase 32-like Neighboring gene 18.8 kDa class V heat shock protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein L-like
    Names
    OSJNBa0036M16.109-1
    Os07g0516900
    P0650C03.24-1
    RNA Binding Protein-like
    polyadenylate-binding protein RBP45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20147384..20151865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792090.3 → XP_015647576.1  RNA-binding protein L-like

      Conserved Domains (4) summary
      pfam04554
      Location:2 → 33
      Extensin_2; Extensin-like region
      cd12344
      Location:129 → 210
      RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:222 → 301
      RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cl17169
      Location:331 → 402
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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