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    LOC4342859 metal transporter Nramp5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342859, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342859
    Gene description
    metal transporter Nramp5-like
    Locus tag
    OSNPB_070257200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NRAMP5; OsNramp5; OJ1057_E05.110
    Expression
    Biased expression in flower buds (RPKM 192.2), roots before flowering (RPKM 83.5) and 1 other tissue See more
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    Genomic context

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    See LOC4342859 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (8952614..8960126, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (8871580..8878943, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene xyloglucan O-acetyltransferase 1 Neighboring gene uncharacterized LOC107281487 Neighboring gene uncharacterized LOC107281732 Neighboring gene uncharacterized LOC107281586

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice. Ishikawa S, et al. Proc Natl Acad Sci U S A, 2012 Nov 20. PMID 23132948, Free PMC Article
    2. Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice. Sasaki A, et al. Plant Cell, 2012 May. PMID 22589467, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadmium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in metal ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metal transporter Nramp5
    Names
    LOC_Os07g15370
    Nramp metal transporter
    putative Nramp1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403041.1 → NP_001389970.1  metal transporter Nramp5

      Status: VALIDATED

      Source sequence(s)
      AB698459, CI257642, CI538753, CI768941, JG458927
      UniProtKB/Swiss-Prot
      Q8H4H5
      UniProtKB/TrEMBL
      B8B4U0, I7GYG6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      8952614..8960126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H4H5.1 GenPept UniProtKB/Swiss-Prot:Q8H4H5

    Gene LinkOut

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