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    LOC4331613 protein SHOOT GRAVITROPISM 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331613, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331613
    Gene description
    protein SHOOT GRAVITROPISM 6
    Locus tag
    OSNPB_030146600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 10.8), milk grains (RPKM 8.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331613 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2593609..2614372)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2584819..2605554)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pheophorbide a oxygenase, chloroplastic-like Neighboring gene uncharacterized LOC4331612 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene uncharacterized LOC136355570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SHOOT GRAVITROPISM 6
    Names
    Os03g0146600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2593609..2614372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776167.3 → XP_015631653.1  protein SHOOT GRAVITROPISM 6 isoform X1

      UniProtKB/TrEMBL
      B9FB22
      Conserved Domains (1) summary
      sd00044
      Location:1435 → 1459
      HEAT; HEAT repeat [structural motif]

    2. XM_015776169.3 → XP_015631655.1  protein SHOOT GRAVITROPISM 6 isoform X2

      UniProtKB/TrEMBL
      B9FB22
      Conserved Domains (1) summary
      sd00044
      Location:1298 → 1321
      HEAT; HEAT repeat [structural motif]

    3. XM_066308286.1 → XP_066164383.1  protein SHOOT GRAVITROPISM 6 isoform X3

      UniProtKB/TrEMBL
      B8ANB4

    RNA

    1. XR_010739850.1 RNA Sequence

    2. XR_010739851.1 RNA Sequence

    3. XR_010739852.1 RNA Sequence

    4. XR_003241299.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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