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    LOC4336408 protein root UVB sensitive 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336408, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336408
    Gene description
    protein root UVB sensitive 2, chloroplastic
    Locus tag
    OSNPB_040517300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336408 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26357962..26362339, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25855668..25860073, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336406 Neighboring gene transcription factor MYB4-like Neighboring gene inositol phosphorylceramide glucuronosyltransferase 1 Neighboring gene phosphoenolpyruvate carboxylase kinase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in auxin polar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to UV-B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein root UVB sensitive 2, chloroplastic
    Names
    Os04g0517300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26357962..26362339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780843.2 → XP_015636329.1  protein root UVB sensitive 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WCG6, A0A8I3B0Q9, A2XVJ5, A3AVL0, Q01J52, Q0JBQ4, Q7XKW2
      Conserved Domains (1) summary
      pfam04884
      Location:53 → 290
      DUF647; Vitamin B6 photo-protection and homoeostasis
    Nucleotide Protein
    Heading Accession and Version

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