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    LOC4328404 pentatricopeptide repeat-containing protein At4g21065 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328404, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328404
    Gene description
    pentatricopeptide repeat-containing protein At4g21065
    Locus tag
    OSNPB_020164600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1661_C12.21
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 3.4), flower buds (RPKM 3.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328404 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3474580..3477622)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3465893..3468839)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277712 Neighboring gene agamous-like MADS-box protein AGL61 Neighboring gene uncharacterized LOC136355043 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 2 Neighboring gene auxin response factor 6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g21065
    Names
    OSJNBa0023I17.4
    Os02g0164600
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3474580..3477622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308069.1 → XP_066164166.1  pentatricopeptide repeat-containing protein At4g21065

      UniProtKB/TrEMBL
      A0A0P0VF99, A2X198, Q0E3N3, Q6H6V8

    2. XM_015768038.3 → XP_015623524.1  pentatricopeptide repeat-containing protein At4g21065

      UniProtKB/TrEMBL
      A0A0P0VF99, A2X198, Q0E3N3, Q6H6V8
      Conserved Domains (2) summary
      PLN03077
      Location:102 → 455
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:291 → 318
      PPR; PPR repeat [structural motif]

    3. XM_066308067.1 → XP_066164164.1  pentatricopeptide repeat-containing protein At4g21065

      UniProtKB/TrEMBL
      A0A0P0VF99, A2X198, Q0E3N3, Q6H6V8

    4. XM_066308068.1 → XP_066164165.1  pentatricopeptide repeat-containing protein At4g21065

      UniProtKB/TrEMBL
      A0A0P0VF99, A2X198, Q0E3N3, Q6H6V8

    5. XM_015768043.3 → XP_015623529.1  pentatricopeptide repeat-containing protein At4g21065

      UniProtKB/TrEMBL
      A0A0P0VF99, A2X198, Q0E3N3, Q6H6V8
      Conserved Domains (2) summary
      PLN03077
      Location:102 → 455
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:291 → 318
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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