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    LOC4338942 protein BUD31 homolog 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338942, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338942
    Gene description
    protein BUD31 homolog 2-like
    Locus tag
    OSNPB_050446300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_18724
    Expression
    Ubiquitous expression in roots before flowering (RPKM 35.8), leaves after flowering (RPKM 34.8) and 6 other tissues See more
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    Genomic context

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    See LOC4338942 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21987581..21990095)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21875917..21878453)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338939 Neighboring gene protein ROS1 Neighboring gene uncharacterized LOC4338943 Neighboring gene protein ROS1C-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein BUD31 homolog 2
    Names
    LOC_Os05g37390
    P0615D12.15
    Protein G10 homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420429.1 → NP_001407358.1  protein BUD31 homolog 2

      Status: VALIDATED

      Source sequence(s)
      CI015056, CI251274, CI365133, CI695270
      UniProtKB/Swiss-Prot
      Q0DHS2, Q65WT0
      UniProtKB/TrEMBL
      A2WX57, A2Y573

    2. NM_001420430.1 → NP_001407359.1  protein BUD31 homolog 2

      Status: VALIDATED

      Source sequence(s)
      CI015056, CI251274, CI365133, CI575110, CI584301, CI695270
      UniProtKB/Swiss-Prot
      Q0DHS2, Q65WT0
      UniProtKB/TrEMBL
      A2WX57, A2Y573

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21987581..21990095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q65WT0.1 GenPept UniProtKB/Swiss-Prot:Q65WT0

    Gene LinkOut

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