LOC4333273 eukaryotic initiation factor 4A-III homolog B-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4333273
Gene description: eukaryotic initiation factor 4A-III homolog B-like
Locus tag: OSNPB_030566800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: RH34; EIF4A3; OsRH34; EIF4A3B; eIF4A-III; eIF-4A-III
Expression: Ubiquitous expression in leaves after flowering (RPKM 43.4), flower buds (RPKM 36.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (21349914..21354424, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (20492418..20496906, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that the gene expression patterns OF DEAD box RNA helicases OsRH2 and OsRH34 were similar in various tissues, but the level of OsRH2 mRNA was about 58-fold higher than that of OsRH34 mRNA in seedlings.
Title: Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleolus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: eukaryotic initiation factor 4A-III homolog B

Names: DEAD-box ATP-dependent RNA helicase 34; Eukaryotic initiation factor 4A-III homolog B; LOC_Os03g36930; OSJNBa0026A15.3; OseIF4AIIIb

NP_001405269.1

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.