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    LOC4344600 plant cysteine oxidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344600, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344600
    Gene description
    plant cysteine oxidase 3
    Locus tag
    OSNPB_080133000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344600 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1856115..1858404)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1843868..1846213)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344598 Neighboring gene uncharacterized LOC107281847 Neighboring gene uncharacterized LOC136351415 Neighboring gene uncharacterized LOC4344602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plant cysteine oxidase 3
    Names
    OSJNBb0009H02.39
    Os08g0133000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1856115..1858404
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793136.3 → XP_015648622.1  plant cysteine oxidase 3 isoform X1

      UniProtKB/TrEMBL
      A2YQY6, B9FYX8, Q69R46
      Conserved Domains (1) summary
      pfam07847
      Location:56 → 265
      PCO_ADO

    2. XM_015793137.3 → XP_015648623.1  plant cysteine oxidase 3 isoform X2

      UniProtKB/TrEMBL
      A2YQY6
      Conserved Domains (1) summary
      pfam07847
      Location:56 → 264
      DUF1637; Protein of unknown function (DUF1637)
    Nucleotide Protein
    Heading Accession and Version

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