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    LOC4331585 ABC transporter C family member 13-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331585, updated on 24-Feb-2024

    Summary

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    Gene symbol
    LOC4331585
    Gene description
    ABC transporter C family member 13-like
    Locus tag
    OSNPB_030142800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LPA2; ABCC13; OsMRP5; OsMRP13; OsABCC13
    Expression
    Broad expression in mature seeds (RPKM 36.4), milk grains (RPKM 35.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331585 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2367836..2374429)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266937 Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene transcription factor WER Neighboring gene uncharacterized LOC4331586 Neighboring gene uncharacterized LOC4331587

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter C family member 13
    Names
    LOC_Os03g04920
    Multidrug resistance-associated protein 13
    Protein LOW PHYTIC ACID 2
    XP_015630971.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417191.1 → NP_001404120.1  ABC transporter C family member 13

      Status: VALIDATED

      Source sequence(s)
      AK064325, AK121451, AP014959, AU165414, BT131433, CA999359, CI245482, CI309419, D22347
      UniProtKB/Swiss-Prot
      A0A0P0VSW0, A2XCD4, Q10RX7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2367836..2374429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775485.2 → XP_015630971.1  ABC transporter C family member 13

      UniProtKB/Swiss-Prot
      Q10RX7
      Conserved Domains (1) summary
      TIGR00957
      Location:230 → 1487
      MRP_assoc_pro; multi drug resistance-associated protein (MRP)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10RX7.1 GenPept UniProtKB/Swiss-Prot:Q10RX7

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials