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    LOC4328960 uncharacterized LOC4328960 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328960, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328960
    Gene description
    uncharacterized LOC4328960
    Locus tag
    OSNPB_020266300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 15.9), flowers (RPKM 15.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9541535..9545460, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9514337..9518286, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C-1 Neighboring gene pentatricopeptide repeat-containing protein At3g16010 Neighboring gene uncharacterized LOC9269607 Neighboring gene bZIP transcription factor RISBZ3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328960
    Names
    Os02g0266300
    P0006C08.34
    protein CbxX, chromosomal
    putative CbxX protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9541535..9545460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771495.3 → XP_015626981.1  uncharacterized protein LOC4328960

      UniProtKB/TrEMBL
      A0A0P0VHH6, B9F4X1, Q6ETX1
      Conserved Domains (3) summary
      sd00045
      Location:49 → 84
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:54 → 154
      Ank_2; Ankyrin repeats (3 copies)
      cl38936
      Location:207 → 389
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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