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    LOC4351511 IQ domain-containing protein IQM3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351511, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4351511
    Gene description
    IQ domain-containing protein IQM3
    Locus tag
    OSNPB_120149900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 89.4), leaves after flowering (RPKM 84.0) and 6 other tissues See more
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    Genomic context

    See LOC4351511 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (2451804..2455616, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase D6PKL2 Neighboring gene protein BUD31 homolog 3-like Neighboring gene 60S ribosomal protein L26-1 Neighboring gene cytochrome P450 94C1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    IQ domain-containing protein IQM3
    Names
    Os12g0149900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404649.1NP_001391578.1  IQ domain-containing protein IQM3

      Status: VALIDATED

      Source sequence(s)
      AK060888, CI145774, CI521911, CI569008
      UniProtKB/TrEMBL
      A0A8J8XW20, A2ZI35, A3CEZ3, Q0IQ33, Q2QXN6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2451804..2455616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764744.2XP_015620230.1  IQ domain-containing protein IQM3

      UniProtKB/TrEMBL
      Q2QXN6