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    LOC4342267 mitogen-activated protein kinase kinase kinase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342267, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342267
    Gene description
    mitogen-activated protein kinase kinase kinase 5
    Locus tag
    OSNPB_070119000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_A04.139
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    Genomic context

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    See LOC4342267 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1025836..1032106, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1015350..1021610, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene uncharacterized LOC4342268 Neighboring gene myb family transcription factor EFM

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase kinase kinase 5
    Names
    Os07g0119000
    P0022B05.104
    putative MAP3K protein kinase(Mitogen-activated protein kinase)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1025836..1032106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789492.3 → XP_015644978.1  mitogen-activated protein kinase kinase kinase 5 isoform X2

      Conserved Domains (1) summary
      cl21453
      Location:376 → 587
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015789490.3 → XP_015644976.1  mitogen-activated protein kinase kinase kinase 5 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X1P8, A2YHM6, Q0D8Z1, Q7X992
      Conserved Domains (1) summary
      cl21453
      Location:376 → 635
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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