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    LOC4340728 uncharacterized LOC4340728 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340728, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340728
    Gene description
    uncharacterized LOC4340728
    Locus tag
    OSNPB_060271500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340728 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (9306922..9311967, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (9130999..9136088, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable amidase At4g34880 Neighboring gene uncharacterized LOC107275293 Neighboring gene RING-H2 finger protein ATL52 Neighboring gene uncharacterized LOC4340730 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4340728
    Names
    Os06g0271500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      9306922..9311967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788571.3 → XP_015644057.1  uncharacterized protein LOC4340728

      Conserved Domains (4) summary
      pfam02992
      Location:278 → 496
      Transposase_21; Transposase family tnp2
      pfam13952
      Location:948 → 1024
      DUF4216; Domain of unknown function (DUF4216)
      pfam13960
      Location:667 → 790
      DUF4218; Domain of unknown function (DUF4218)
      pfam13963
      Location:3 → 75
      Transpos_assoc; Transposase-associated domain
    Nucleotide Protein
    Heading Accession and Version

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