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    LOC4325107 formin-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325107, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325107
    Gene description
    formin-like protein 1
    Locus tag
    OSNPB_010897700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FH1; OsFH1; P0506A10.7
    Expression
    Biased expression in flowers (RPKM 15.6), flower buds (RPKM 8.2) and 3 other tissues See more
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    Genomic context

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    See LOC4325107 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39645517..39649488, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39013814..39018124, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein mS80 (rPPR6) Neighboring gene beta-glucosidase 4-like Neighboring gene sister chromatid cohesion 1 protein 4 Neighboring gene uncharacterized LOC107277813

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formin-like protein 1
    Names
    LOC_Os01g67240
    P0674H09.24
    putative FH protein NFH2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39645517..39649488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773549.3 → XP_015629035.1  formin-like protein 1

      UniProtKB/Swiss-Prot
      Q0JGX4, Q8S0F0
      Conserved Domains (1) summary
      pfam02181
      Location:502 → 904
      FH2; Formin Homology 2 Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S0F0.1 GenPept UniProtKB/Swiss-Prot:Q8S0F0

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