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    LOC4338230 probable LRR receptor-like serine/threonine-protein kinase At1g56130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338230, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338230
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Locus tag
    OSNPB_050256100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338230 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (9496297..9508724)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (9461602..9474101)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit I Neighboring gene small nucleolar RNA U54 Neighboring gene uncharacterized LOC112939028 Neighboring gene uncharacterized LOC136356613 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Names
    Os05g0256100
    putative protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      9496297..9508724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783683.3 → XP_015639169.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X1

      UniProtKB/TrEMBL
      B8B032, Q6F2P9
      Conserved Domains (3) summary
      PLN00113
      Location:111 → 962
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:700 → 964
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:125 → 148
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015783688.3 → XP_015639174.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X3

      Conserved Domains (4) summary
      sd00033
      Location:125 → 148
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:426 → 613
      Malectin; Di-glucose binding within endoplasmic reticulum
      pfam13855
      Location:291 → 352
      LRR_8; Leucine rich repeat
      cl21453
      Location:700 → 859
      PKc_like; Protein Kinases, catalytic domain

    3. XM_015783684.3 → XP_015639170.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X2

      UniProtKB/TrEMBL
      B9FNI9
      Conserved Domains (3) summary
      PLN00113
      Location:111 → 960
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:698 → 962
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:125 → 148
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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