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    LOC4336883 V-type proton ATPase subunit G1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336883, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336883
    Gene description
    V-type proton ATPase subunit G1
    Locus tag
    OSNPB_040601700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 186.8), flowers (RPKM 178.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336883 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30880924..30883281, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30374698..30377140, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336881 Neighboring gene uncharacterized LOC4336882 Neighboring gene uncharacterized LOC107277058 Neighboring gene multiple organellar RNA editing factor 2, chloroplastic Neighboring gene uncharacterized LOC107276783

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit G1
    Names
    Os04g0601700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30880924..30883281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780984.3 → XP_015636470.1  V-type proton ATPase subunit G1

      UniProtKB/TrEMBL
      A2XX62, A3AX36, Q01HT5, Q7FAM9, Q7FAS6
      Conserved Domains (1) summary
      pfam03179
      Location:5 → 109
      V-ATPase_G; Vacuolar (H+)-ATPase G subunit

    2. XM_015780983.3 → XP_015636469.1  V-type proton ATPase subunit G1

      UniProtKB/TrEMBL
      A2XX62, A3AX36, Q01HT5, Q7FAM9, Q7FAS6
      Conserved Domains (1) summary
      pfam03179
      Location:5 → 109
      V-ATPase_G; Vacuolar (H+)-ATPase G subunit
    Nucleotide Protein
    Heading Accession and Version

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