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    LOC4329647 uncharacterized LOC4329647 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329647, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329647
    Gene description
    uncharacterized LOC4329647
    Locus tag
    OSNPB_020553802
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 12.3), roots after flowering (RPKM 11.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21375076..21389300)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20896221..20910605)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937805 Neighboring gene uncharacterized LOC4329645 Neighboring gene RNA polymerase II transcriptional coactivator KIWI Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene uncharacterized LOC4329649

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment. Liu B, et al. Nat Commun, 2019 Jul 5. PMID 31278262, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329647
    Names
    Os02g0553802
    Os02g0554000
    P0470G10.13
    P0470G10.14
    SET domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21375076..21389300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769943.3 → XP_015625429.1  uncharacterized protein LOC4329647

      UniProtKB/TrEMBL
      B9F0I7
      Conserved Domains (3) summary
      smart00570
      Location:1359 → 1409
      AWS; associated with SET domains
      cd19172
      Location:1409 → 1551
      SET_SETD2; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins
      pfam07496
      Location:1258 → 1305
      zf-CW; CW-type Zinc Finger
    Nucleotide Protein
    Heading Accession and Version

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