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    LOC4333458 probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333458, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333458
    Gene description
    probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
    Locus tag
    OSNPB_030617900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AGPR
    Expression
    Ubiquitous expression in roots before flowering (RPKM 50.1), flower buds (RPKM 38.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (24298921..24303098, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (23438218..23442293, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cyclin-D5-1-like Neighboring gene transcription factor bHLH139-like Neighboring gene jasmonate-induced oxygenase 2 Neighboring gene uncharacterized LOC107278552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetyl-gamma-glutamyl-phosphate reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arginine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
    Names
    LOC_Os03g42110
    N-acetyl-glutamate semialdehyde dehydrogenase
    NAGSA dehydrogenase
    OSJNBa0063J18.8
    NP_001404637.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417708.1 → NP_001404637.1  probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK071544, CI072026, CI308770, CI357084, CI373507, CI605249
      UniProtKB/Swiss-Prot
      Q10GQ5, Q6AV34
      UniProtKB/TrEMBL
      B8AMJ8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      24298921..24303098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AV34.1 GenPept UniProtKB/Swiss-Prot:Q6AV34

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials