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    LOC4327039 NAD(P)H dehydrogenase (quinone) FQR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327039, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327039
    Gene description
    NAD(P)H dehydrogenase (quinone) FQR1
    Locus tag
    OSNPB_010784800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327039 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33870205..33874162)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33264236..33268321)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327037 Neighboring gene receptor-like serine/threonine-protein kinase SD1-8 Neighboring gene transcription factor bHLH123 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD(P)H dehydrogenase (quinone) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAD(P)H dehydrogenase (quinone) FQR1
    Names
    B1070A12.15
    Os01g0784800
    putative quinone-oxidoreductase QR2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33870205..33874162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766024.3 → XP_015621510.1  NAD(P)H dehydrogenase (quinone) FQR1

      UniProtKB/TrEMBL
      A0A0P0V910, A2ZYI3, Q8LQN2
      Conserved Domains (1) summary
      cl00438
      Location:3 → 201
      FMN_red; NADPH-dependent FMN reductase
    Nucleotide Protein
    Heading Accession and Version

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