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    LOC4326932 bifunctional nuclease 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326932, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326932
    Gene description
    bifunctional nuclease 1-like
    Locus tag
    OSNPB_010702000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BBD1; OsBBD1; OsJ_03158; P0421H07.6
    Expression
    Broad expression in leaves before flowering (RPKM 553.9), leaves after flowering (RPKM 242.6) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29660971..29664547, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29071365..29076388, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase TCM_000336 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH6 Neighboring gene subtilisin-like protease SBT5.4 Neighboring gene uncharacterized LOC4326934

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of VCB complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional nuclease 1
    Names
    LOC_Os01g50622
    P0047E11.30
    putative wound inducive

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409007.1 → NP_001395936.1  bifunctional nuclease 1

      Status: VALIDATED

      Source sequence(s)
      CF326331, CI144194, CI403319, CI662537
      UniProtKB/Swiss-Prot
      A0A0P0V721, B8A8D2, Q5N8J3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29660971..29664547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765837.3 → XP_015621323.1  bifunctional nuclease 1 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0V721, B8A8D2, Q5N8J3
      Conserved Domains (1) summary
      pfam02577
      Location:132 → 253
      DNase-RNase; Bifunctional nuclease

    2. XM_015765836.3 → XP_015621322.1  bifunctional nuclease 1 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0V721, B8A8D2, Q5N8J3
      Conserved Domains (1) summary
      pfam02577
      Location:132 → 253
      DNase-RNase; Bifunctional nuclease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N8J3.1 GenPept UniProtKB/Swiss-Prot:Q5N8J3

    Gene LinkOut

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