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    LOC4343741 U-box domain-containing protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343741, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343741
    Gene description
    U-box domain-containing protein 4
    Locus tag
    OSNPB_070584900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1060_D03.106; OJ1127_E01.131
    Expression
    Ubiquitous expression in flower buds (RPKM 11.0), roots before flowering (RPKM 10.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23951275..23954298)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23721667..23724795)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277646 Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene hyphally regulated cell wall protein 3 Neighboring gene putative MO25-like protein At5g47540

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 4
    Names
    Os07g0584900
    arm repeat containing protein homolog-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23951275..23954298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791327.3 → XP_015646813.1  U-box domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0X838, B9FY46, Q7F1U7
      Conserved Domains (2) summary
      PLN03200
      Location:197 → 425
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:214 → 239
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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