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    LOC4350057 putative disease resistance protein RGA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350057, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350057
    Gene description
    putative disease resistance protein RGA1
    Locus tag
    OSNPB_110211300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 5.0), leaves after flowering (RPKM 3.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5832934..5843915, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5776972..5787864, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase 2 Neighboring gene uncharacterized LOC136353944 Neighboring gene uncharacterized LOC9266905 Neighboring gene uncharacterized LOC136353945 Neighboring gene uncharacterized LOC136353946

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein RGA1
    Names
    Os11g0211300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5832934..5843915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760974.3 → XP_015616460.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      Q0ITW4, Q2R8Y8
      Conserved Domains (5) summary
      PLN03210
      Location:1176 → 1266
      PLN03210; Resistant to P. syringae 6; Provisional
      COG4886
      Location:562 → 886
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:639 → 662
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:183 → 410
      NB-ARC; NB-ARC domain
      pfam18052
      Location:14 → 106
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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